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Conference Time UTC+3
(your local time)
TDWG 2022 Detailed Schedule last updated 14 October
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Sofia, Bulgaria 16–21 October 2022
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Sunday, 16 October
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17:00-19:00 Welcome reception at the Grand Hotel Millennium Sofia on the 2nd floor - take this opportunity to pick up registration materials and meet colleagues over snacks & a beverage.
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Monday, 17 October
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9:00-18:00 EEST / UTC 6:00-15:00 (see your local time here)
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Plenary Session in the Shakespeare Hall, with overflow into the Mozart Hall
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9:00 - 11:00 Opening Session with Keynotes
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Moderator: Shelley James; Time Keeper: Chandra Earl; Online helper: Ely Wallis
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9:00 - 9:30 Welcome and opening
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9:30 - 10:15 KEYNOTE: Biodiversity of Bulgaria: Characteristics, protection and trends. By Pavel Stoev, Zdravko Hubenov, Anna Ganeva, Gergin A. Blagoev, Boris Barov https://doi.org/10.3897/biss.6.95683
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Pavel Stoev
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10:15 - 11:00 KEYNOTE: An Introduction to Scientific Names of Organisms, and the Taxon Concepts they Represent. By Richard L. Pyle https://doi.org/10.3897/biss.6.93926
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Rich Pyle
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11:00 - 11:30 Break
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Monday, Concurrent session 1
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Shakespeare Hall Mozart Hall
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11:30 - 12:30 SYM08 - PART 1 Event-based management of Natural Science collections data driven by challenging research use-cases Contributed Oral 01
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Moderator: Falko Glöckler; Time Keeper: James Macklin ; Online helper: Holly Little Moderator: Steve Baskauf; Time Keeper: Online helper:
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11:30 - 11:45 Adapting Museum Workflows to Accommodate Omic-based, Multi-species Occurrences from Environmental Samples. By Christopher Meyer and Rebecca Snyder https://doi.org/10.3897/biss.6.95054 Establishing Plankton Imagery Dataflows Towards International Biodiversity Data Aggregators. By Patricia Martin-Cabrera, Ruben Perez Perez, Jean-Olivier Irrison, Fabien Lombard, Klas Ove Möller, Saskia Rühl, Veronique Creach, Markus Lindh, Lars Stemmann, Lennert Schepers https://doi.org/10.3897/biss.6.94196
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Christopher Meyer (V) Patricia Martin-Cabrera (V)
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11:45 - 12:00 Digitizing Insect-Plant Interactions: Lessons from the gall collection at the State Museum of Natural History Stuttgart. By Jessica Awad, Ann-Kathrin Mertz, Ingo Wendt, Carlos Monje, Lars Krogmann https://doi.org/10.3897/biss.6.94286 RECODE: Towards a next-gen collections management system as part of the institutional and community data ecosystem. By Steen Dupont, Matt Woodburn, Ben Collier, Lucy Ellis, Gerry Hey, Tzy-Ting Hsu, Mike Sadka, Dave Smith https://doi.org/10.3897/biss.6.90886
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Jessica Awad (V) Steen Dupont
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12:00 - 12:15 Specimen Identifiers: Linking tissues, DNA samples, and sequence data to voucher specimens in publicly accessible databases. By Daniel G Mulcahy https://doi.org/10.3897/biss.6.94625 The ENA Source Attribute Helper: An API for improved biological source data. By Vikas Gupta, Joana Paupério, Josephine Burgin, Suran Jayathilaka, Guy Cochrane https://doi.org/10.3897/biss.6.91118
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Daniel Mulcahy Vikas Gupta
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12:15 - 12:30 DiSSCo Flanders: A regional natural science collections management infrastructure in an international context. By Maarten Trekels, Lise Beirinckx, Tim Claerhout, Chantal Dugardin, Frederik Leliaert, Zjef Pereboom, Dieter Slos, Ann Van Baelen, Leen Vandepitte, Emily Veltjen, Steven Verstockt, Patricia Mergen https://doi.org/10.3897/biss.6.94350 Enabling Community Curation of Biological Source Annotations of Molecular Data Through PlutoF and the ELIXIR Contextual Data Clearinghouse. By Vishnukumar Balavenkataraman Kadhirvelu, Kessy Abarenkov, Allan Zirk, Joana Paupério, Guy Cochrane, Suran Jayathilaka, Olaf Bánki, Jerry Lanfear, Filipp Ivanov, Timo Piirmann, Raivo Pöhönen, Urmas Kõljalg https://doi.org/10.3897/biss.6.93595
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Maarten Trekels Vishnukumar Balavenkataraman Kadhirvelu (V)
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12:30 - 14:00 Lunch
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Monday Concurrent session 2
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Shakespeare Hall Mozart Hall
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14:00 - 16:00 SYM02 How are biodiversity infrastructures stepping up to address the biodiversity crisis? SYM06 Open-source approaches to mobilizing biodiversity data
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Moderators: Quentin Groom, Joana Pauperio; Time Keeper: Vamsi Krishna Kommineni; Online helper: Holly Little Moderator: Abby Benson; Time Keeper: ; Online helpers: Jonathan Pye, Tylar Murray, Tim van der Stap
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14:00 - 14:15 Enabling Published Taxonomic Data to be used to Address the Biodiversity Crisis: Biodiversity Literature Repository and TreatmentBank. By Donat Agosti, Patrick Ruch, Jose Benito Gonzalez Lopez, Lyubomir Penev https://doi.org/10.3897/biss.6.91167 Mobilizing and Enhancing Legacy Biodiversity Data: The case of Karl Wilhelm Verhoeff's correspondence. By Carlos A. Martínez-Muñoz, Dorothee Huff, Marie Meister, Christine Driller https://doi.org/10.3897/biss.6.93679
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Donat Agosti Carlos A. Martínez-Muñoz (V)
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14:15 - 14:30 Supplying the Missing Links: Providing immediate access to the taxonomic literature from our taxonomic databases. By Nicole Kearney, Roderic Page https://doi.org/10.3897/biss.6.91104 Open Science for Better FAIRness: A biodiversity virtual research environment point of view. By Coline Royaux, Elie Arnaud, Julien Sananikone, Marie Jossé, Mélanie Madelin, Dominique Pelletier, Olivier Norvez, Yvan Le Bras https://doi.org/10.3897/biss.6.95110
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Nicole Kearney Coline Royaux (V) & Yvan Le Bras
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14:30 - 14:45 The Australian National Species List steps up for biodiversity conservation. By Anne Fuchs, Endymion Dante Cooper, Greg Whitbread https://doi.org/10.3897/biss.6.91516 A Pre-ingestion Framework for Darwin Core Archives. By Mahmoud Sadeghi, Patricia Koh, Peggy Newman https://doi.org/10.3897/biss.6.93853
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Anne Fuchs (V), Endymion Dante Cooper (V) Mahmoud Sadeghi (V)
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14:45 - 15:00 GBIF’s (Global Biodiversity Information Facility) New Strategic Framework to Address Biodiversity Data Needs. By Joe Miller https://doi.org/10.3897/biss.6.91093 Contemporary Data Management for Biodiversity Observation Networks leading to Linked Open Data Publishing through Distributed Techniques applying RO-Crate and GitHub Actions. By Marc Portier, Cedric Decruw, Katrina Exter, Rory Meyer, Lennert Tyberghein, Laurian Van Maldeghem https://doi.org/10.3897/biss.6.94630
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Joe Miller Marc Portier (V)
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15:00 - 15:15 Towards Connecting Molecular Data and the Biodiversity Research Community: An ENA and ELIXIR biodiversity community perspective. By Joana Paupério, Josephine Burgin, Toni Gabaldón, Jerry Lanfear, Robert M Waterhouse, Guy Cochrane https://doi.org/10.3897/biss.6.91204 Leveraging the Symbiota Support Hub for Biodiversity Data Mobilization. By Katelin Pearson, Edward Gilbert, Nico Franz, Samanta Orellana, Greg Post, Laura Rocha Prado, Lindsay J. Walker, Jenn M. Yost https://doi.org/10.3897/biss.6.93893
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Joana Paupério Katelin Pearson (V)
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15:15 - 15:30 Global Biodata Resources: Challenges to long-term sustainability of a crucial data infrastructure. By Chuck Cook, Guy Cochrane https://doi.org/10.3897/biss.6.90946 Facilitating the Mobilization and Sharing of Biodiversity Data using a Standard, Open, and Replicable Course Curriculum. By Laura Anne Russell, Mélianie Raymond, Maheva Bagard Laursen, Sharon Grant, Sophie Pamerlon, David Bloom https://doi.org/10.3897/biss.6.93809
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Chuck Cook Laura Anne Russell (V)
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15:30 - 15:45 From Biodiversity Observation Networks to Datasets and Workflows Supporting Biodiversity Indicators, a French Biodiversity Observation Network (BON) Essential Biodiversity Variables (EBV) Operationalization Pilot using Galaxy and Ecological Metadata Language. By Coline Royaux, Olivier Norvez, Marie Jossé, Elie Arnaud, Julien Sananikone, Sandrine Pavoine, Dominique Pelletier, Jean-Baptiste Mihoub, Yvan Le Bras https://doi.org/10.3897/biss.6.94957 Open Source Workshop to Mobilize Marine Biodiversity Data. By Abigail Benson, Mathew Biddle, Tylar Murray, Jonathan Pye, Tim van der Stap https://doi.org/10.3897/biss.6.93839
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Coline Royaux (V) Abigail Benson
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15:45 - 16:00 Discussion Discussion
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16:00 - 16:30 Break
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Monday, Concurrent session 3
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Shakespeare Hall Mozart Hall
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16:30 - 18:00 SYM08 - PART 2 Event-based management of Natural Science collections data driven by challenging research use-cases Contributed Oral 02
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Moderator: Falko Glöckler; Time Keeper: James Macklin ; Online helper: Moderators: Abigail Benson; Time Keeper: Steve Baskauf; Online helper:
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16:30 - 16:45 Representation of Object Provenance for Research on Natural Science Objects: Samples, parts and derivatives in DINA-compliant collection data management. By Christian Bölling, Satpal Bilkhu, Christian Gendreau, Falko Glöckler, James Macklin and David Shorthouse https://doi.org/10.3897/biss.6.94531 Indexing Biotic Interactions in GBIF data. By José Augusto Salim, Katja Chantre Seltmann, Jorrit H Poelen, Antonio Mauro Saraiva https://doi.org/10.3897/biss.6.93565
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Falko Glöckler José A. Salim (V)
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16:45 - 17:00 Challenges and Opportunities for Collection Data Sharing: dwc:MaterialSample. By Teresa Jegelewicz Mayfield-Meyer https://doi.org/10.3897/biss.6.94110 Georeferencing Historic Collection Data. By Caitlin Lara Thorn https://doi.org/10.3897/biss.6.91578
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Teresa Jegelewicz Mayfield-Meyer (V) Caitlin Thorn
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17:00 - 17:15 Diversifying the GBIF Data Model. By Tim Robertson, John R Wieczorek, Mélianie Raymond https://doi.org/10.3897/biss.6.94420 Bootstrapping a Biodiversity Knowledge Graph. By Roderic Page https://doi.org/10.3897/biss.6.91497
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John R Wieczorek (V) & Tim Robertson (V) Roderic Page (V)
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17:15 - 17:30 Discussion Wildlife Wrangler: A high-level data processing framework that supports the utilization of species occurrence data for biogeographical analyses. By Nathan M Tarr, Abigail Benson, Matthew J Rubino https://doi.org/10.3897/biss.6.93823
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Nathan Tarr (V)
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17:30 - 17:45 BIOfid Steps Up to Provide Introduced Species Information: The case of myriapods in German greenhouses. By Christine Driller, Carlos A. Martínez-Muñoz https://doi.org/10.3897/biss.6.93666
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Christine Driller (V), Carlos A. Martínez-Muñoz (V)
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17:45 - 18:00 Not a programmer? You can mobilize data from biodiversity informatics APIs, too! By Geoffrey Ower https://doi.org/10.3897/biss.6.93902
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Geoff Ower (V)
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Tuesday, 18 October
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9:00-18:00 EEST / UTC 6:00-15:00 (see your local time here )
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Tuesday, Concurrent session 1
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Shakespeare Hall Mozart Hall
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9:00 - 11:00 SYM05 Standardizing Biodiversity Data Quality SYM15 Information session about late-stage Task Group submissions of standards additions Note time offset
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Moderator: Arthur Chapman; Time Keeper: Arnald Marcer; Online helper: Arthur Chapman Moderator: Steve Baskauf; Time Keeper: Elspeth Haston; Online helper: Yanina Sica
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9:00 - 9:15 Preliminary Findings of Usability Studies on an Ontology-Aware Taxon-by-Character Matrix Editor. By Hong Cui, Bruce Ford, Julian Starr, Anton Tony Reznicek, Yuxuan Zhou, Quan Gan, Étienne Léveillé-Bourret, Étienne Lacroix-Carignan, James Macklin, Jacques Cayouette, Paul Catling, Geoffrey Levin, Jeff Saarela, Tyler Smith, Donald Sutherland, Joel Sachs https://doi.org/10.3897/biss.6.90949 Introduction 9:00 - 9:05
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Hong Cui (V) Steven J Baskauf
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9:15 - 9:30 It Takes Years for a Good Wine to Mature: Task Group 2 - data quality tests and assertions. By Lee Belbin, Arthur Chapman, Paul J. Morris, John Richard Wieczorek https://doi.org/10.3897/biss.6.91078 Latimer Core: A new data standard for collection descriptions. By Matt Woodburn, Jutta Buschbom, Gabriele Droege, Sharon Grant, Quentin Groom, Janeen Jones, Maarten Trekels, Sarah Vincent, Kate Webbink https://doi.org/10.3897/biss.6.91159 9:05 - 9:20
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Lee Belbin (V) Matt Woodburn
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9:30 - 9:45 Finding Data Gaps in the GBIF Backbone Taxonomy. By John Thomas Waller https://doi.org/10.3897/biss.6.91312 Plinian Core: The long and winding road. By Francisco Pando, María A. Mora, William Ulate, Manuel Vargas, Camila Andrea Plata, Gloria Martínez-Sagarra https://doi.org/10.3897/biss.6.91584 9:20 - 9:35
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John Thomas Waller Francisco Pando
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9:45 - 10:00 From Raw Data to Data Standards through Quality Assessment and Semantic Annotation. By Julien Sananikone, Elie Arnaud, Olivier Norvez, Sophie Pamerlon, Anne-Sophie Archambeau, Yvan Le Bras https://doi.org/10.3897/biss.6.91205 MIDS: The digitisation standard for Natural Science collections. By Elspeth M Haston, Cat Chapman https://doi.org/10.3897/biss.6.94604 9:35 - 9:50
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Yvan Le Bras Elspeth M Haston
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10:00 - 10:15 Human and Machine Working Together towards High Quality Specimen Data: Annotation and Curation of the Digital Specimen. By Sam Leeflang, Wouter Addink, Soulaine Theocharides https://doi.org/10.3897/biss.6.90987 State of the (Re-)Ratification of ABCD 2.06 and ABCD EFG under the SDS Guidelines. By David Fichtmueller, Mareike Petersen, Falko Glöckler, Anton Güntsch https://doi.org/10.3897/biss.6.93811 9:50 - 10:05
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Sam Leeflang David Fichtmueller
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10:15 - 10:30 Implementing Nestedness in Darwin Core: An epidemiology case study. By Francesca Jaroszynska, Guillaume Body, Sophie Pamerlon, Anne-Sophie Archambeau https://doi.org/10.3897/biss.6.94355 Application of Humboldt Extension to Real-world Cases. By Yanina V. Sica, Kate Ingenloff, Yi-Ming GAN, Zachary Kachian, Steven J Baskauf, John Wieczorek, Paula F Zermoglio, Robert D. Stevenson https://doi.org/10.3897/biss.6.91502 10:05 - 10:20
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Francesca Jaroszynska Yanina V. Sica
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10:30 - 10:45 Formulaic Unpublished Names: The need for a TDWG standard and for the inclusion of such names in apps such as iNaturalist. By Arthur D Chapman, Thomas Mesaglio, Guy Taseski https://doi.org/10.3897/biss.6.91062 Using the Audubon Core Controlled Vocabularies for subjectPart and subjectOrientation. By Steven J Baskauf, Jennifer C Girón Duque, Matthew Nielsen https://doi.org/10.3897/biss.6.90955 10:20 - 10:35
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Arthur Chapman Steven J Baskauf
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10:45 - 11:00 Discussion MaterialSample and its Properties. By Teresa Jegelewicz Mayfield-Meyer, Steven J Baskauf, Dag Endresen, Christian Bölling, John Wieczorek, Richard L. Pyle, Jutta Buschbom https://doi.org/10.3897/biss.6.91407 10:35 - 10:50
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Teresa Jegelewicz Mayfield-Meyer (V)
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Discussion 10:50 - 11:00
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11:00 - 11:30 Break
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Tuesday, Concurrent session 2
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Shakespeare Hall Mozart Hall
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11:30 - 12:30 Contributed Oral 03 LT07 How to exchange management data on wildlife and invasive alien species
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Moderators: Visotheary Ung; Time Keeper: Steve Baskauf; Online helper: Holly Little Moderators: Lien Reyserhove, Quentin Groom; Time Keeper: Quentin Groom; Online helper: Jasmijn Hillaert
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11:30 - 11:45 Biodiversity Informatics: A success story for the long-term financial sustainability of the European Open Science Cloud (EOSC). By Patricia Mergen, Miguel Rey Mazon, Dale Robertson https://doi.org/10.3897/biss.6.91207 Practical Examples of Cooperation and of Visualizing Species Information: Species identification and invasive alien species (IAS). By Malin Strand, Mora Aronsson, Liselott Sjödin Skarp, Johan Liljeblad, Hanna Ilander, Holger Dettki, Lena Tranvik https://doi.org/10.3897/biss.6.93881
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Patricia Mergen (V) Johan Liljeblad
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11:45 - 12:00 Honing the Visibility of TDWG: Communications expertise required. By Mareike Petersen, Jose M. Alonso, Vijay Barve, Gail Kampmeier, Holly Little, Deborah L Paul, William Ulate, Visotheary Ung, Paula F Zermoglio https://doi.org/10.3897/biss.6.93644 manIAS: A community-driven data model and data exchange format for the management of invasive alien species and wildlife. By Lien Reyserhove, Jasmijn Hillaert, Tim Adriaens, Peter Desmet, Bram D'hondt, Quentin J Groom, Damiano Oldoni https://doi.org/10.3897/biss.6.93453
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Mareike Petersen Lien Reyserhove
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12:00 - 12:15 Calculating the Digitization Level of Specimens with the Minimum Information about a Digital Specimen (MIDS) Standard. By Mathias Dillen, Pieter Huybrechts, Quentin Groom, Lynn Delgat https://doi.org/10.3897/biss.6.90879 Discussion 12:00 - 12:30
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Mathias Dillen
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12:15 - 12:30 Extinct Taxa in an Extant World: Working towards better fossil taxonomic representation. By Holly Little, Christina Byrd, Talia Karim, Erica Krimmel, Ben Norton https://doi.org/10.3897/biss.6.94417
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Holly Little
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12:30 - 13:30 Lunch
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13:30 - 14:00 Group photograph (location to be announced)
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Tuesday, Concurrent session 3 (note offset start times for talks)
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14:00 - 16:00 Shakespeare Hall Mozart Hall
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SYM18 The extended taxonomic authority: moving beyond species lists to linking species data LTD14 Ensuring FAIR Principles and Open Science through Integration of Biodiversity Data
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In-room helper: Chandra Earl; Online session organizers: Nathan Upham, Beckett Sterner; Time Keeper: Yanina Sica In-room helper: José Fortes; Time Keeper: David Fichtmueller; Online session organizers: Elizabeth Ellwood, Anna Kirsten Monfils, Jyotsana Pandey
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14:00 - 14:15 Extended Taxonomic Curation: Moving beyond species lists to linking species data. Nathan S. Upham, Caleb Powell, Laura Rocha Prado, Nico Franz, Beckett Sterner https://doi.org/10.3897/biss.6.93670 The Importance of Collecting and Archiving Data on Domestic and Cultivated Organisms. By Quentin Groom, Tim Adriaens, Sandro Bertolino, Kendra Phelps, Jorrit H Poelen, DeeAnn Marie Reeder, David Mark Richardson, Nancy Simmons, Maarten Trekels, Nathan Upham https://doi.org/10.3897/biss.6.90864 14:00 - 14:10
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Nathan S. Upham (V) Quentin Groom
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Linked Data Publishing of the World Register of Marine Species (WoRMS) as a Basis for Uniformly Linking-up Resources to Accepted Taxon Names. By Laurian Van Maldeghem, Marc Portier, Leen Vandepitte, Britt Lonneville, Bart Vanhoorne, Lennert Tyberghein https://doi.org/10.3897/biss.6.94903 14:10 - 14:20
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Laurian Van Maldeghem (V)
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14:15 - 14:30 Taxonomic Curation in a Multi-taxa Symbiota Portal. By K. Samanta Orellana, Edward Gilbert, Lindsay J. Walker, Katelin Pearson, Laura Rocha Prado, Greg Post, Jenn Yost, Nico Franz https://doi.org/10.3897/biss.6.93671 Early Career Scientists are Critical to the FAIR Data Pathway. By Sara E Hansen, Nico Franz, Anna K Monfils https://doi.org/10.3897/biss.6.90989 14:20 - 14: 30
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K. Samanta Orellana (V) Sara E Hansen (V)
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14:30 - 14:45 Getting the GIST: Testing an integrative data structure for linking taxonomy, biodiversity and conservation. By Emily L Sandall, Aurore A Maureaud, Robert Guralnick, Melodie McGeoch, Yanina Vanesa Sica, Matthew Rogan, Doug Booher, Mark John Costello, Robert Edwards, Nico Franz, Kate Ingenloff, Maisha Lucas, Charles J Marsh, Jennifer McGowan, Stefan Pinkert, Ajay Ranipeta, Peter Uetz, John Wieczorek, Walter Jetz https://doi.org/10.3897/biss.6.94209 Open science tools: Supporting hands-on creation of the "digital extended specimen". By Nicky Nicolson, Eve Lucas https://doi.org/10.3897/biss.6.91123 14:30 - 14:40
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Emily L. Sandall (V) & Aurore A. Maureaud (V) Nicky Nicolson
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14:45 - 15:00 Modeling Taxon Concepts: A new approach to an old problem. By Richard L. Pyle, Nicolas Bailly, David Remsen https://doi.org/10.3897/biss.6.93927 Zen and the Art of Persistent Identifier Service Development for Digital Specimen. By Sharif Islam, Soulaine Theocharides, Wouter Addink https://doi.org/10.3897/biss.6.91168 14:40 - 14:50
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Richard L. Pyle Soulaine Theocharides
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15:00 - 15:15 Catalogue of Life: From a list to a service. By Olaf Bánki https://doi.org/10.3897/biss.6.94040 Signed Citations: Making citations of digital scientific content persistent. By Michael J Elliott, Jorrit H Poelen, Jose AB Fortes https://doi.org/10.3897/biss.6.90911 14:50 - 15:00
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Olaf Bánki Michael J Elliott
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15:15 - 15:30 Introducing ChecklistBank: An index and repository for taxonomic data. By Markus Döring, Thomas S. Jeppesen, Olaf Bánki https://doi.org/10.3897/biss.6.93938 Reusable Ontology Modelling Patterns for Biodiversity Data with Reasonable Ontology Templates (OTTR). By Laura Ann Slaughter, Leif Harald Karlsen, Eveliina Päivikki Kallioniemi, Martin Georg Skjæveland https://doi.org/10.3897/biss.6.93939 15:00 - 15:10
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Markus Döring Laura A. Slaughter
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15:30 - 15:45 Extending Recognition for Taxonomic Curation Beyond the Traditional Authorities. By Laura Rocha Prado, Nathan Upham, Nico Franz, Beckett Sterner https://doi.org/10.3897/biss.6.94252 Semantic Indexing of Open Scientific Literature to Help Users Discover and Navigate through Publications Networks. By Franck Michel, Anne Toulet, Anna Bobasheva, Marie-Claude Deboin, Sébastien Dupré, Aline Menin, Marco Winckler, Andon Tchechmedjiev https://doi.org/10.3897/biss.6.93640 15:10 - 15:20
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Laura Rocha Prado (V) Franck Michel
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15:45 - 16:00 Discussion The OpenBiodiv Knowledge Graph Rebuilt: A semantic hub on top of the ARPHA-published content and the Biodiversity Literature Repository. By Lyubomir Penev, Mariya Dimitrova, Georgi Zhelezov, Teodor Georgiev https://doi.org/10.3897/biss.6.91357 15:20 - 15:30
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Lyubomir Penev, Teodor Georgiev
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Discussion 15:30 - 16:00
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16:00 - 16:30 Break
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Tuesday, Concurrent session 4
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Shakespeare Hall Mozart Hall
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16:30 - 18:00 SYM12 Information extraction from digital specimen images using Artificial Intelligence WKSH11 Data liberation for open knowledge systems: the legal landscape of data licensing in publishing
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In-room session organizers: Quentin Groom, Jitendra Gaikwad, Vamsi Krishna Kommineni; Time Keeper: Chandra Earl; Online helpers: Alexis Joly, Renato Panda, Pierre Bonnet Moderators: Jutta Buschbom, Laurence Bénichou; Time Keeper: ; Online helper: Donat Agosti
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16:30 - 16:45 The Specimen Data Refinery: Using a scientific workflow approach for information extraction. By Laurence Livermore, Paul Brack, Ben Scott, Stian Soiland-Reyes, Oliver Woolland https://doi.org/10.3897/biss.6.93500
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Laurence Livermore
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16:45 - 17:00 ALICE Software: Machine learning & computer vision for automatic label extraction. By Arianna Salili-James, Ben Scott, Vincent S. Smith https://doi.org/10.3897/biss.6.91443
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Arianna Salili-James
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17:00 - 17:15 Cloud AI: A comparison of specimen image data extraction processes. By Ben Scott https://doi.org/10.3897/biss.6.90951
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Ben Scott
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17:15 - 17:30 Extracting Landmark and Trait Information from Segmented Digital Specimen Images Generated by Artificial Neural Networks. By Yasin Bakış, Bahadır Altıntaş, Xiaojun Wang, M. Maruf, Anuj Karpatne, Henry Bart https://doi.org/10.3897/biss.6.94955
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Yasin Bakış (V)
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17:30 - 17:45 When Specimens Become Environmental Traits: Automating data extraction in aerobiology. By Mónica González-Alonso, Jaime Ulayar-Arroyo, Arturo H. Ariño https://doi.org/10.3897/biss.6.94914
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Arturo H. Ariño (V) & Mónica González-Alonso (V)
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17:45 - 18:00 Discussion
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Wednesday, 19 October
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9:00-18:00 EEST / UTC 6:00-15:00
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Field trip to Rila Monastery (bus leaves from front of conference hotel 9:00)
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Thursday, 20 October
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9:00-18:00 EEST / UTC 6:00-15:00 (see your local time here)
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Thursday, Concurrent session 1
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Shakespeare Hall Mozart Hall
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9:00 - 10:30 SYM09 A Global Collections Network: building capacity and developing community Contributed Oral 04
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Moderator: Jutta Buschbom; Time Keeper: ; Online helper: Sharon Grant Moderator: Steve Baskauf; Time Keeper: Vamsi Krishna Kommineni; Online helper: Holly Little
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9:00 - 9:15 Campaigning for a Global Collections Network: Improving the digital representation and visibility of natural science collections from Latin America and the Caribbean. By Jutta Buschbom, Néstor Acosta-Buenaño, Victor Eduardo Chocho, Javier Roberto Irazábal, James Macklin, Leslie Melisa Ojeda Cabrera, Anabela Plos, Soledad Tancoff, Pablo Teta, Carlos Valle, Alina Freire-Fierro https://doi.org/10.3897/biss.6.91356 A Practical Approach to Publishing and Using Event-based Biodiversity Data. By Javier Molina, Federico Mendez, Dax Kelly, David Martin, Doug Palmer https://doi.org/10.3897/biss.6.91512
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Jutta Buschbom Javier Molina (V)
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9:15 - 9:30 Building Networks to Promote Knowledge of Brazil’s Biodiversity: The experience of the INCT - Virtual Herbarium. By Maria Regina de V. Barbosa, Ana Odete Vieira, Ariane L Peixoto, Dora Ann Lange Canhos, João R Stehmann, Mariângela Menezes, Leonor C Maia https://doi.org/10.3897/biss.6.91462 How Much of Biodiversity is Represented in Collections: A big data workflow of aggregated occurrence data. By Pieter Huybrechts, Maarten Trekels, Quentin Groom https://doi.org/10.3897/biss.6.94279
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Maria Regina de V. Barbosa (V) Pieter Huybrechts
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9:30 - 9:45 GRSciColl: What is the Global Registry of Scientific Collections and How to Contribute? By Marie Grosjean, Morten Høfft, Marcos Lopez Gonzalez, Andrea Hahn, Tim Robertson https://doi.org/10.3897/biss.6.93875 Enhancing Botanical Knowledge Graphs with Machine Learning. By Qianqian Gu, Ben Scott, Vincent S. Smith https://doi.org/10.3897/biss.6.91384
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Marie Grosjean Qianqian Gu
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9:45 - 10:00 The iDigBio US Collections List: Now powered by GBIF. By Cat Chapman https://doi.org/10.3897/biss.6.93672 Specimods: A web-based tool for producing Genbank submission files for sequenced museum specimens. By Richard A. Levy, Jessie W. Berta-Thompson, Gary Olds, Andrew W. Wilson https://doi.org/10.3897/biss.6.94596
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Cat Chapman (V) Richard Levy
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10:00 - 10:15 Connecting the Dots: Joint development of best practices between infrastructures in support of bidirectional data linking. By Wouter Addink, Niki Kyriakopoulou https://doi.org/10.3897/biss.6.91428 UNITE Species Hypotheses Matching Analysis. By Kessy Abarenkov, Urmas Kõljalg, R. Henrik Nilsson https://doi.org/10.3897/biss.6.93856
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Wouter Addink Kessy Abarenkov (V)
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10:15 - 10:30 Panel discussion A Possible Workflow from New and Legacy Publications to keep the World Flora Online up to date with New Species and Augmenting Taxonomic Treatments. By Donat Agosti, Laurence Benichou, Lyubomir Penev, Roger Hyam https://doi.org/10.3897/biss.6.91241
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Led by Jutta Buschom and Sharon Grant Donat Agosti
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10:30 - 11:00 Break
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Thursday, Concurrent session 2
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Shakespeare Hall Mozart Hall
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11:00 - 12:30 SYM10 Biodiversity Informatics perspectives from Asia & the Global South INT19 The role of the Wikimedia ecosystem in linking biodiversity data
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Online session organizers: Vijay Barve, Balasubramanian D, Prabhakar Rajagopal; Time Keeper: Visotheary Ung; In-room helper: Shelley James Moderators: Daniel Mietchen, Maarten Trekels; Time Keeper: Steve Baskauf; Online helper: David Fichtmueller
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11:00 - 11:15 Taiwan Biodiversity Information Facility (TaiBIF)’s Role in Facilitating Open Biodiversity Data in Taiwan. By Daphne Z Hoh, Melissa JY Liu, Mao-Ning Tuanmu https://doi.org/10.3897/biss.6.93628 Using Crowd-sourcing Platforms to Increase and Spread Knowledge on the Biodiversity in Sub-Saharan Africa. By Mohammed Kamal Deen Fuseini Dnshitobu, Agnes Ajuma Abah, Benedict Udeh, Andra Waagmeester https://doi.org/10.3897/biss.6.93803
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Daphne Z Hoh (V) Mohammed Kamal-Deen Fuseini Dnshitobu (V)
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11:15 - 11:30 Revolutionising Collection Management at the National Museum of Namibia. By Willem Coetzer, Francois Becker https://doi.org/10.3897/biss.6.93874 Community Data Mobilization in Wikidata: A paleontology perspective. Holly Little, Talia Karim, Erica Krimmel, Ben Norton, Jessica Utrup, Lindsay J. Walker, Jacob Van Veldhuizen https://doi.org/10.3897/biss.6.94416
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Willem Coetzer Holly Little
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11:30 - 11:45 Understanding the Importance of Social Media as a Citizen Science Platform by Using Tiger Sighting Photographs from Facebook. By Nandita Barman, Arjan Basu Roy, Rishin Basu Roy, Vijay Barve https://doi.org/10.3897/biss.6.93924 Transforming Closed Silos into Shared Resources: Opening up data on historical collection agents affiliated with the Museum für Naturkunde Berlin. By Sabine von Mering, Katja Kaiser, Mareike Petersen https://doi.org/10.3897/biss.6.93787
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Nandita Barman (V) Sabine von Mering
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11:45 - 12:00 Building a Database using Unconventional Sources: Squirrels of India. By Swati Udayraj, Senan D'Souza, Aravind P S, Nandini Rajamani https://doi.org/10.3897/biss.6.94039 Connecting IndExs Editors and exsiccata IDs with Wikidata for Disambiguation of People Names and Work in Botanical and Mycological Collections. By Dagmar Triebel, Camila Uribe-Holguin, Stefan Seifert, Markus Weiss, Peter Scholz https://doi.org/10.3897/biss.6.93585
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Swati Udayraj (V) Camila Uribe-Holguin (V)
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12:00 - 12:15 Discussion Unpacking IPCC and IPBES Reports. By Shweata N. Hegde, Ayush Garg, Peter Murray-Rust, Daniel Mietchen https://doi.org/10.3897/biss.6.94347
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Shweata N. Hegde
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12:15 - 12:30 Visualizing Biodiversity Information using Wikidata and Scholia. By Daniel Mietchen, Steph Tyszka, Tina Heger, Maud Bernard-Verdier, Camille Musseau, Jonathan Jeschke https://doi.org/10.3897/biss.6.94184
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Daniel Mietchen
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12:30 - 14:00 Lunch
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Thursday, Concurrent session 3
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Shakespeare Hall Mozart Hall
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14:00 - 16:00 SYM01 Linking Worldwide Plant Data – World Flora Online, WFO Plant List, IPNI, and beyond SYM03 National biodiversity data centers: challenges and opportunities
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Moderators: Chuck Miller, Walter Berendsohn; Time Keeper: ; Online helper Moderators: Katja Luther, Anton Güntsch; Time Keeper: ; Online helper: David Fichtmueller
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14:00 - 14:15 The World Flora Online: Summary and Status. By Chuck Miller, Walter Berendsohn, William Ulate https://doi.org/10.3897/biss.6.93898 French Biodiversity Data Hub: Linking local to global biodiversity through international initiatives and open science clouds. By Coline Royaux, Julien Sananikone, Elie Arnaud, Olivier Norvez, Alice Ainsa, Sylvain Morin, Sophie Pamerlon, Anne-Sophie Archambeau, Yvan Le Bras https://doi.org/10.3897/biss.6.91374
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Chuck Miller, William Ulate Yvan Le Bras
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14:15 - 14:30 Rhakhis: A workflow for managing the WFO taxonomic backbone. By Roger Hyam, Alan Elliott, William Ulate https://doi.org/10.3897/biss.6.91432 DiSSCo UK: A new partnership to unlock the potential of 137 million UK-based specimens. By Vincent Stuart Smith, Helen Hardy, Tara Wainwright https://doi.org/10.3897/biss.6.91391
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Roger Hyam Vincent Stuart Smith
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14:30 - 14:45 Organizing and Maintaining a Taxonomic Expert Network: Lessons from the Caryophyllales TEN. By Nadja Korotkova https://doi.org/10.3897/biss.6.91113 NFDI4Biodiversity: a German infrastructure for biodiversity data. By Katja Luther, Anton Güntsch, Birgitta Koenig-Ries, David Fichtmueller https://doi.org/10.3897/biss.6.93869
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Nadja Korotkova Katja Luther
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14:45 - 15:00 Evolution of GBIF's Taxonomic Backbone. By Joe Miller https://doi.org/10.3897/biss.6.91092 NBN Atlas: Making data work for nature. By Sophia Ratcliffe, Helen Manders Jones https://doi.org/10.3897/biss.6.91451
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Joe Miller Sophia Ratcliffe
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15:00 - 15:15 Assembly of Plant Taxonomic Lists through Catalogue of Life. By Olaf Bánki https://doi.org/10.3897/biss.6.91112 Growth and Collaboration in the Atlas of Living Australia. By Peggy Newman, Hamish Holewa, Elycia Wallis https://doi.org/10.3897/biss.6.93854
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Olaf Bánki Peggy Newman (V)
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15:15 - 15:30 New Developments and Future Vision of the Nomenclatural Database IPNI and the Taxonomic Database WCVP. By Rafaël Govaerts, Helen Hartley, Jonathan Krieger, Emma Wrankmore https://doi.org/10.3897/biss.6.91060 ARISE: Building an infrastructure for species recognition and biodiversity monitoring in the Netherlands. By Elaine van Ommen Kloeke, Chantal Huijbers, Kevin Beentjes, Jacob W. Kamminga, Piet A. J. Bakker, W. Daniel Kissling https://doi.org/10.3897/biss.6.93613
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Rafaël Govaerts, Helen Hartley Elaine van Ommen Kloeke
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15:30 - 15:45 Demonstration of the New IPNI (International Plant Names Index) Registration System. By Emma Wrankmore, Jonathan Krieger, Rafaël Govaerts, Helen Hartley https://doi.org/10.3897/biss.6.91371 LIFE RIPARIAS Early Alert: Using GBIF-mediated data to better manage invasive alien species. By Nicolas Noé, Tim Adriaens, Bram D'hondt, Lien Reyserhove, Peter Desmet, Damiano Oldoni https://doi.org/10.3897/biss.6.93879
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Emma Wrankmore, Jonathan Krieger Damiano Oldoni
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15:45 - 16:00 PhycoBank: Repository for algal novelties. By Andreas Müller, Anton Güntsch, Regine Jahn, Andreas Kohlbecker, Wolf-Henning Kusber, Jonas Zimmermann https://doi.org/10.3897/biss.6.90885 The Role and the Purpose of National Biodiversity Data Infrastructures in between the Local and International Data Services. By Kari M Lahti https://doi.org/10.3897/biss.6.91489
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Andreas Müller Kari M. Lahti
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16:00 - 16:30 Break
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Thursday, Concurrent session 4
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Shakespeare Hall Mozart Hall
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16:30 - 18:00 SYM17 - An oak tree sighting in the ocean? Approaches to correcting biodiversity data after collection VPS Virtual Posters
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Online session organizers: Rob Stevenson, Libby Ellwood; Time Keeper: ; In-room helper: Nicole Kearney Moderator: Chandra Earl; Time Keeper: ; Online helper: Cat Chapman
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16:30 - 16:45 Herbarium Specimen Label Interpretation and Transcription: First steps used to clean digitized data. By Henry Engledow https://doi.org/10.3897/biss.6.93888 Luise Quoß https://doi.org/10.3897/biss.6.91215
Christian Langer https://doi.org/10.3897/biss.6.93593
Wouter Koch https://doi.org/10.3897/biss.6.91225
Rukaya Johaadien https://doi.org/10.3897/biss.6.91585
Eric R Sokol https://doi.org/10.3897/biss.6.93915
Arianna Giannini https://doi.org/10.3897/biss.6.93584
Knut Anders Hovstad https://doi.org/10.3897/biss.6.94078
Ben Collier https://doi.org/10.3897/biss.6.91297
Anahita J.N. Kazem https://doi.org/10.3897/biss.6.95668
Sofie Meeus https://doi.org/10.3897/biss.6.93887
Samira Babalou https://doi.org/10.3897/biss.6.93867
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Henry Engledow
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16:45 - 17:00 Automated Filtering May Remove a Large Fraction of Records, But May Have Little Impact on Downstream Analyses. By Alexander Zizka https://doi.org/10.3897/biss.6.90988
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Alexander Zizka (V)
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17:00 - 17:15 Reviewing Observations for the Idaho Amphibian and Reptile iNaturalist Project For Improved Data Quality. By Charles Russell Peterson, Patrick D Giltz https://doi.org/10.3897/biss.6.95052
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Charles Russell Peterson (V)
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17:15 - 17:30 How the Citizen Science Platform iSpot Ensures Data Accuracy During and After Collection. By Michael Dodd https://doi.org/10.3897/biss.6.94578
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Michael Dodd (V)
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17:30 - 17:45 Assessing Identification Accuracy of Research Grade iNaturalist Observations in Lichens and other Taxonomically Difficult Organisms. By Jessica Allen, R. Troy McMullin https://doi.org/10.3897/biss.6.95689
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Jessica L Allen (V)
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17:45 - 18:00 Discussion
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19:15 Bus transport to restaurant; departs from in front of Grand Millennium
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20:00 - 22:00 Conference banquet at Restaurant Vodenitzata
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Friday, 21 October
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9:00-18:00 EEST / UTC 6:00-15:00 (see your local time here
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Friday, Concurrent session 1
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Shakespeare Hall Mozart Hall
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9:00 - 10:30 SYM04 pt 1 Sharing and visualizing species data and information Contributed Oral 05
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Moderators: Francisco Pando, William Ulate; Time Keeper: Chandra Earl; Online helper: Moderator: Jitendra Gaikwad; Time Keeper: Steve Baskauf; Online helper:
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9:00 - 9:15 Linking Fennoscandian Species of Two Fungal Genera: A test case for linked open data. By Johan Liljeblad, Tapani Lahti, Elisabet Sjöro, Tea von Bonsdorff-Salminen, Katriina Bendiksen, Liselott Sjodin Skarp, Markus Döring https://doi.org/10.3897/biss.6.93882 Building an Australian Reference Genome Atlas. By Nicholas J dos Remedios, Sarah Richmond, Jeff Christiansen, Nigel Ward, Hamish Holewa, Kathryn A Hall https://doi.org/10.3897/biss.6.91415
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Johan Liljeblad Kathryn Hall (V)
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9:15 - 9:30 Self-publishing Biodiversity Data Products on the Web. By Matthew Yoder, José Luis Pereira, Hernán Pereira, Dmitry A Dmitriev, Ralph Edward DeWalt, Maria-Marta Cigliano, Deborah L Paul, James R Flood https://doi.org/10.3897/biss.6.94061
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Matthew Yoder
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9:30 - 9:45 TaxonWorks as a Tool for Managing Large Biodiversity Projects. By Dmitry A Dmitriev, Yanghui Cao, Christopher H. Dietrich https://doi.org/10.3897/biss.6.93668 PD13 Essential Biodiversity Variables, from concept to implementation
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Dmitry Dmitriev Moderators: Miguel Fernandez, Néstor Fernández, Luise Quoss, Christian Langer, Henrique Pereira; Time Keeper: Steve Baskauf; Online helper:
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9:45 - 10:00 NEARSIDE: Structured kNowledge Extraction frAmework from SpecIes DEscriptions. By Maya Sahraoui, Marc Pignal, Régine Vignes Lebbe, Vincent Guigue https://doi.org/10.3897/biss.6.94297 Essential Biodiversity for Understanding Change. By Henrique Pereira, Néstor Fernández, Miguel Fernandez https://doi.org/10.3897/biss.6.91108
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Maya Sahraoui Henrique Pereira, Néstor Fernández
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10:00 - 10:15 Discussion Discussion
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10:15 - 10:30
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10:30 - 11:00 Break
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Friday, Concurrent session 2
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Shakespeare Hall Mozart Hall
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11:00 - 12:30 SYM04 pt 2 Sharing and visualizing species data and information Unconference
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Moderators: Francisco Pando, William Ulate; Time Keeper: ; Online helper: Moderators: Abigail Benson, Dimitri Brosens
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11:00 - 11:15 Sharing Species Pages through Living Atlases using Plinian Core: Current state and new developments. By Maria Auxiliadora Mora-Cross, Manuel Vargas, William Ulate https://doi.org/10.3897/biss.6.94718
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Manuel Vargas (V), María Auxiliadora Mora-Cross (V), William Ulate
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11:15 - 11:30 The Large Taxon Collider: Building the Atlas of Living Australia's taxonomic backbone. By Doug Palmer, Peggy Newman https://doi.org/10.3897/biss.6.95102
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Doug Palmer (V)
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11:30 - 11:45 Synospecies, a Linked data Application to Explore Taxonomic Names. By Reto Gmür, Donat Agosti, Guido Sautter https://doi.org/10.3897/biss.6.93707
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Donat Agosti
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11:45 - 12:00 An Algorithmic Approach to Reducing Taxonomic Detail from Actual Datasets to their Metadata Representation to Increase Findabilty. By Cedric Decruw, Leen Vandepitte, Ruben Perez Perez, Laura Marquez, Marc Portier, Bart Vanhoorne, Lennert Tyberghein https://doi.org/10.3897/biss.6.94603
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Cedric Decruw
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12:00 - 12:15 Discussion
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12:15 - 12:30
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12:30 - 14:00 Lunch
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Plenary Session in the Shakespeare Hall, with overflow into the Mozart Hall
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14:00 - 14:45 Keynote Session
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Moderator: Jitendra Gaikwad; Time Keeper: Shelley James; Online helper: Holly Little
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KEYNOTE: Plant-pollinator Interaction Data: A case study of the WorldFAIR project. By Debora Pignatari Drucker, José Augusto Salim, Maarten Trekels, Quentin Groom, Cynthia Parr, Filipi Miranda Soares, Kayna Agostini, Antonio Mauro Saraiva, Laura Molloy, Simon Hodson, Arofan Gregory https://doi.org/10.3897/biss.6.94310
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Debora Pignatari Drucker (V)
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Concurrent sessions
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Shakespeare Hall Mozart Hall
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14:45 - 16:00 Contributed Oral 06 Vacant
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Moderator: Jitendra Gaikwad; Time Keeper: Steve Baskauf; Online helper: Shelley James
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14:45 - 15:00 Interpreting and Georeferencing the Concept of “Near” in Locality Descriptors in Biodiversity Records. By Peter D Campbell, Andrew Townsend Peterson https://doi.org/10.3897/biss.6.93862
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Pete Campbell (V)
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15:00 - 15:15 Collections do not have to Remain Ambiguous Forever: Seven steps to getting the correct people into your data. By Quentin Groom, Christian Bräuchler, Robert W. N. Cubey, Mathias Dillen, Pieter Huybrechts, Nicole Kearney, Siobhan Leachman, Deborah L Paul, Heather Rogers, Joaquim Santos, David Peter Shorthouse, Alison Vaughan, Sabine von Mering, Elspeth M Haston https://doi.org/10.3897/biss.6.91194
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Quentin Groom
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15:15 - 15:30 Bridging a Gap in Metabarcoding Research: The ASV Table Registry. By Christian Bräunig, Björn Quast, Peter Grobe https://doi.org/10.3897/biss.6.91504
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Christian Bräunig (V)
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15:30 - 16:00 Break
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Plenary Session in the Shakespeare Hall, with overflow into the Mozart Hall
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16:30 - 18:00 Closing and Keynote Session
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Moderator: Deborah Paul; Time Keeper: Shelley James; Online helper:
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16:30 - 16:35 Introduction
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16:35 - 17:20 KEYNOTE: The Sociological History of Transforming TDWG to Biodiversity Information Standards (TDWG). By Visotheary Ung, Gail Kampmeier https://doi.org/10.3897/biss.6.93866
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Visotheary Ung
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17:20 - 18:00 Business meeting - Year in review; upcoming in 2023 and 2024
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18:00 Conference closing